AMiGA Anaylsis of Microbial Growth Assays

• Home
• Documentation
• Configuration
• Get Time at Threshold
• Estimate Confidence
• Code Vignette
• Compare Parameters
• Normalize Parameters
• Pool Replicates
• Detect Diauxie
• Command Line Interface
• Plot Heatmaps
• Test Hypotheses
• Subset Data
• Batch Analyze
• Fit Curves
• Summarize & Plot
• Prepare Metadata
• Prepare Data
• Install AMiGA
• Example Pipeline

In AMiGA, you can analyze a single file or multiple files in a single command. To analyze a single file, simply point to it directly with the --i or --input arguments

python amiga.py fit -i /Users/firasmidani/experiment/data/ER1_PM2-1.txt

Bug if you want to analyze multiple files, simply deposit them in the data folder and point AMiGA to the working directory.

python amiga.py fit -i /Users/firasmidani/experiment